Delete Assay
delete_assay.Rd
delete_assay()
deletes an existing assay type in the assay lookup table
Arguments
- con
A DBI connection object obtained from DBI::dbConnect()
- assay_id
A numeric ID for the targeted assay
get_assays
Details
Note: If an assay type has been associated with an assay result record, then
the database restricts deleting this assay type. You must first update those records
with a new assay type before reattempting to delete the assay type. Consider
using the update_assay_status
function if you are wanting to
retire an assay type while retaining its value for historic records.
See also
Other assay functions:
add_assay()
,
get_assays()
,
update_assay()
,
update_assay_status()
Examples
# example database connection
cfg <- config::get()
con <- DBI::dbConnect(RPostgres::Postgres(),
dbname = cfg$dbname,
host = cfg$host,
port = cfg$port,
user = cfg$username,
password = cfg$password)
#> Error: connection to server at "localhost" (::1), port 5432 failed: Connection refused (0x0000274D/10061)
#> Is the server running on that host and accepting TCP/IP connections?
#> connection to server at "localhost" (127.0.0.1), port 5432 failed: Connection refused (0x0000274D/10061)
#> Is the server running on that host and accepting TCP/IP connections?
all_assays <- get_assays(con)
#> Error in h(simpleError(msg, call)): error in evaluating the argument 'dbObj' in selecting a method for function 'dbIsValid': object 'con' not found
View(all_assays) # to view the ID of the assay needing deletion
#> Error in eval(expr, envir, enclos): object 'all_assays' not found
delete_assay(con, 1)
#> Error in h(simpleError(msg, call)): error in evaluating the argument 'dbObj' in selecting a method for function 'dbIsValid': object 'con' not found