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update_genetic_method_status.Rd

update_genetic_method_status() changes active flag on existing genetic method in the genetic method lookup table

Usage

update_genetic_method_status(con, genetic_method_id, set_active = TRUE)

Arguments

con

A DBI connection object obtained from DBI::dbConnect()

genetic_method_id

A numeric ID for the targeted genetic method get_agencies

set_active

A boolean, TRUE for activating and FALSE for deactivating. When a record is active, it is returned by default when get_agencies is called. This helps preserve look up values that are valid in historic contexts, but are no longer valid for current data records.

See also

Other genetic method functions: add_genetic_method(), delete_genetic_method(), get_genetic_methods(), update_genetic_method()

Examples

# example database connection
cfg <- config::get()
con <- DBI::dbConnect(RPostgres::Postgres(),
                      dbname = cfg$dbname,
                      host = cfg$host,
                      port = cfg$port,
                      user = cfg$username,
                      password = cfg$password)
#> Error: connection to server at "localhost" (::1), port 5432 failed: Connection refused (0x0000274D/10061)
#> 	Is the server running on that host and accepting TCP/IP connections?
#> connection to server at "localhost" (127.0.0.1), port 5432 failed: Connection refused (0x0000274D/10061)
#> 	Is the server running on that host and accepting TCP/IP connections?

all_agencies <- get_agencies(con)
#> Error in h(simpleError(msg, call)): error in evaluating the argument 'dbObj' in selecting a method for function 'dbIsValid': object 'con' not found
View(all_agencies) # to view the ID of the genetic method needing status change
#> Error in eval(expr, envir, enclos): object 'all_agencies' not found

#deactivate
update_genetic_method_status(con, 4, set_active=FALSE)
#> Error in h(simpleError(msg, call)): error in evaluating the argument 'dbObj' in selecting a method for function 'dbIsValid': object 'con' not found
#reactivate
update_genetic_method_status(con, 4)
#> Error in h(simpleError(msg, call)): error in evaluating the argument 'dbObj' in selecting a method for function 'dbIsValid': object 'con' not found