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Update Sample Location

update_sample_location.Rd

update_sample_location() updates an existing sample location in the sample location lookup table

Usage

update_sample_location(con, sample_location_id, sample_location)

Arguments

con

A DBI connection object obtained from DBI::dbConnect()

sample_location_id

A numeric ID for the targeted sample location get_sample_locations

sample_location

A valid sample location dataframe with the following:

  1. code character A short code for the agency

  2. agency_name character The agency's proper name

See also

Other sample location functions: add_sample_location(), delete_sample_location(), get_sample_locations(), update_sample_location_status()

Examples

# example database connection
cfg <- config::get()
con <- DBI::dbConnect(RPostgres::Postgres(),
                      dbname = cfg$dbname,
                      host = cfg$host,
                      port = cfg$port,
                      user = cfg$username,
                      password = cfg$password)
#> Error: connection to server at "localhost" (::1), port 5432 failed: Connection refused (0x0000274D/10061)
#> 	Is the server running on that host and accepting TCP/IP connections?
#> connection to server at "localhost" (127.0.0.1), port 5432 failed: Connection refused (0x0000274D/10061)
#> 	Is the server running on that host and accepting TCP/IP connections?

all_sample_locations <- get_sample_locations(con)
#> Error in h(simpleError(msg, call)): error in evaluating the argument 'dbObj' in selecting a method for function 'dbIsValid': object 'con' not found
View(all_sample_locations) # to view the ID of the sample location needing updates
#> Error in eval(expr, envir, enclos): object 'all_sample_locations' not found
updated_sample_location <- data.frame(code = "UCD",
                         agency_name = "University of California, Davis")
update_sample_location(con, 4, updated_sample_location)
#> Error in h(simpleError(msg, call)): error in evaluating the argument 'dbObj' in selecting a method for function 'dbIsValid': object 'con' not found