Model Data

Data used directly as model inputs

Adult Datasets

Data used as model inputs to passage to spawner (p2s) model or directly input to stock recruit

p2s_model_covariates_standard

Passage to Spawner Model Covariates Standard

Juvenile Datasets

Data used as inputs to juvenile bt-spas-x abundance model

weekly_juvenile_abundance_catch_data

Weekly BT-SPAS-X Catch Data

weekly_juvenile_abundance_model_data

Weekly BT-SPAS-X Model Efficency Data

Survival Datasets

Data used as inputs to survival model

survival_model_inputs

Survival Model Data

Helper Data

Data used as helper datasets to generate model data

Juvenile Datasets

RST monitoring datasets

site_lookup

Site Lookup

rst_catch

RST Catch Data

rst_trap

RST Trap Data

release

RST efficiency trial releases

recaptures

RST efficiency trial recaptures

Adult Datasets

Adult passage and survey monitoring datasets

annual_adult

Annual adult estimates

Modeling Ruleset Datasets

Helper datasets used to subset, categorize and describe model data, used to prepare weekly_juvenile_abundance_model_data

daily_yearling_ruleset

Daily Yearling Rulesets

btspasx_special_priors_data

Special Priors for BT-SPAS-X Abundance Model

weekly_hours_fished

Weekly Hours Fished

Environmental Data

Environmental gage data used pulled from USGS/CDEC and used as covatiates to models

environmental_data

Environmental Gage Data

Helper Functions

Functions used to generate model data

fahrenheit_to_celsius()

Convert Fahrenheit to Celsius

celsius_to_fahrenheit()

Convert Celsius to Fahrenheit

pull_detections_data_from_ERDDAP()

Pull Detections Data Based on Study IDs

pull_fish_data_from_ERDDAP()

Pull Fish Data from ERDDAP

pull_reciever_data_from_ERDDAP()

Pull Receiver Data from ERDDAP

pull_study_ids_from_ERDDAP()

Pull Study IDs from ERDDAP

aggregate_detections_butte()

Aggregate Detections for Butte Region

aggregate_detections_feather()

Aggregate Detections for Feather River Region

aggregate_detections_sacramento()

Aggregate Detections Data for Sacramento River Sites

get_receiver_sites_metadata()

Get Receiver Sites Metadata for Given Detections Dataframe

make_fish_encounter_history()

Make Fish Encounter History