Model Data

Data used directly as model inputs

Stock Recruit Datasets

Data used as model inputs to stock recruit

annual_adult

Annual adult estimates

adult_model_years

Adult Modeling Years

stock_recruit_covariates

Stock recruit covariates

BT-SPAS-X Datasets

Data used as inputs to juvenile BT-SPAS-X abundance model

weekly_juvenile_abundance_catch_data

Weekly BT-SPAS-X Catch Data

weekly_juvenile_abundance_efficiency_data

Weekly BT-SPAS-X Model Efficency Data

rst_model_years

RST Modeling Years

Covariates

Covariate input datasets

stock_recruit_covariates

Stock recruit covariates

forecast_covariates

Forecast covariates

Survival and Travel Time Datasets

Data used as inputs to survival model

survival_model_inputs

Survival Model Data

detection_history_feather_butte

Travel Time Model Data - Feather River and Butte Creek

detection_history_sacramento

Travel Time Model Data - Sacramento

PLAD Datasets

Data used as inputs to PLAD model

completed_genetic_samples

Completed Genetic Samples

Monitoring Data

Salmonid and environmental datasets used to generate model datasets.

RST Datasets

RST monitoring datasets compiled across streams.

site_lookup

Site Lookup

rst_catch

RST Catch Data

rst_trap

RST Trap Data

release

RST efficiency trial releases

recaptures

RST efficiency trial recaptures

rst_model_years

RST Modeling Years

CWT Datasets

Coded wire tag release and recapture datasets

hatchery_release

Hatchery Release

rst_cwt_recaptures

RST Recaptures

feather_hatchery_release

Feather Hatchery Release

Adult Datasets

Adult passage and survey monitoring datasets

annual_adult

Annual adult estimates

escapement_estimates_all_runs

Escapement estimates all runs

Environmental Datasets

Environmental gage data provided by stream teams or pulled from USGS/CDEC and used as covariates to models

flow_data

Environmental Gage Data - Flow

temperature_data

Environmental Gage Data - Temperature

Modeling Ruleset Datasets

Helper datasets used to subset, categorize and describe model data, used to prepare weekly_juvenile_abundance_model_data

daily_yearling_ruleset

Daily Yearling Rulesets

weekly_hours_fished

Weekly Hours Fished

Helper Datasets

Helper datasets used in analysis

river_km_lookup

River Kilometer Lookup

Helper Functions

Functions used to generate model data

fahrenheit_to_celsius()

Convert Fahrenheit to Celsius

celsius_to_fahrenheit()

Convert Celsius to Fahrenheit

pull_detections_data_from_ERDDAP()

Pull Detections Data Based on Study IDs

pull_fish_data_from_ERDDAP()

Pull Fish Data from ERDDAP

pull_reciever_data_from_ERDDAP()

Pull Receiver Data from ERDDAP

pull_study_ids_from_ERDDAP()

Pull Study IDs from ERDDAP

aggregate_detections_butte()

Aggregate Detections for Butte Region

aggregate_detections_feather()

Aggregate Detections for Feather River Region

aggregate_detections_sacramento()

Aggregate Detections Data for Sacramento River Sites

get_receiver_sites_metadata()

Get Receiver Sites Metadata for Given Detections Dataframe

make_fish_encounter_history()

Make Fish Encounter History