Reference

Model and Submodels Functions Functions used as to run submodels/models
BTSPAS-X Functions to run BTSPAS-X
bt_spas_x_bugs()	Execute BT-SPAS-X in WinBUGs
run_single_bt_spas_x()	Call BT-SPAS-X on a single site/run year combination
run_multiple_bt_spas_x()	Call BT-SPAS-X model on all site/run years
P2S Functions to run P2S
run_passage_to_spawner_model()	Run Passage to Spawner (P2S) STAN Model
Survival Functions to run Survival Model
run_survival_model()	Call Survival Model
Model Results Data objsects produced by models
P2S_model_fits	Passage to Spawner Parameter Estimates
P2S_comparison_results	Passage to Spawner Covariate Comparison results
Model Data Additional data beyons SRJPEdata needed to run model
bt_spas_x_bayes_params	BT-SPAS-X BUGS parameters
Helper Functions Functions used as to generate model data / format model outputs
get_bt_spas_x_data_list()	Prepare Data Object for BT-SPAS-X WinBUGs call
get_predicted_spawners_from_P2S()	Extract Predicted Spawners from P2S Model
compare_P2S_model_covariates()	Compare Environmental Covariates in Passage to Spawner (P2S) Model
compare_P2S_covariates_within_stream()	Compare Environmental Covariates in Passage to Spawner (P2S) Model Within a Stream
extract_bt_spas_x_results()	Extract results from BT-SPAS-X bugs object
get_hyper_distribution_parameter_estimates()	Extract hyper-distribution parameters from BT-SPAS-X
get_weekly_juvenile_abundance()	Extract weekly juvenile abundance
get_weekly_trap_efficiency()	Extract weekly trap efficiency from BT-SPAS-X object