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Add Protocol

add_protocol.Rd

add_protocol() adds a new protocol to the protocol lookup table

Usage

add_protocol(con, protocol)

Arguments

con

A DBI connection object obtained from DBI::dbConnect()

protocol

A valid protocol dataframe, reference protocol_template as an example

See also

Other protocol functions: add_protocol_based_on(), delete_protocol(), get_protocols(), update_protocol(), update_protocol_status()

Examples

# example database connection
cfg <- config::get()
con <- DBI::dbConnect(RPostgres::Postgres(),
                      dbname = cfg$dbname,
                      host = cfg$host,
                      port = cfg$port,
                      user = cfg$username,
                      password = cfg$password)
#> Error: connection to server at "localhost" (::1), port 5432 failed: Connection refused (0x0000274D/10061)
#> 	Is the server running on that host and accepting TCP/IP connections?
#> connection to server at "localhost" (127.0.0.1), port 5432 failed: Connection refused (0x0000274D/10061)
#> 	Is the server running on that host and accepting TCP/IP connections?

new_protocol <- protocol_template
new_protocol$software_version <- "3.11.20"
add_protocol(con, new_protocol)
#> Error in h(simpleError(msg, call)): error in evaluating the argument 'dbObj' in selecting a method for function 'dbIsValid': object 'con' not found