Update Protocol

update_protocol() updates an existing protocol in the protocol lookup table

Usage

update_protocol(con, protocol_id, protocol)

Arguments

con

A DBI connection object obtained from DBI::dbConnect()

protocol_id

A numeric ID for the targeted protocol get_protocols

protocol

A valid protocol dataframe, reference protocol_template as an example

See also

Other protocol functions: add_protocol(), add_protocol_based_on(), delete_protocol(), get_protocols(), update_protocol_status()

Examples

# example database connection
cfg <- config::get()
con <- DBI::dbConnect(RPostgres::Postgres(),
                      dbname = cfg$dbname,
                      host = cfg$host,
                      port = cfg$port,
                      user = cfg$username,
                      password = cfg$password)
#> Error: connection to server at "localhost" (::1), port 5432 failed: Connection refused (0x0000274D/10061)
#> 	Is the server running on that host and accepting TCP/IP connections?
#> connection to server at "localhost" (127.0.0.1), port 5432 failed: Connection refused (0x0000274D/10061)
#> 	Is the server running on that host and accepting TCP/IP connections?

all_protocols <- get_protocols(con)
#> Error in h(simpleError(msg, call)): error in evaluating the argument 'dbObj' in selecting a method for function 'dbIsValid': object 'con' not found
View(all_protocols) # to view the ID of the protocol needing updates
#> Error in eval(expr, envir, enclos): object 'all_protocols' not found

updated_protocol <- protocol_template
updated_protocol$software_version <- "3.11.20"
update_protocol(con, 1, updated_protocol)
#> Error in h(simpleError(msg, call)): error in evaluating the argument 'dbObj' in selecting a method for function 'dbIsValid': object 'con' not found